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Pipeline for detecting mis-assemblies in metagenomic assemblies

Variational autoencoder for metagenomic binning

variant detection in massively parallel sequencing data

Python API for comprehensive GWAS analysis using GEMMA

Command-line tools for manipulating VCF files

A set of tools written in Perl and C++ for working with VCF files. This package only contains the C++ libraries whereas the package perl-vcftools-vcf contains the perl libraries

Estimating RNA velocity in single cell RNA sequencing datasets

A library for the analysis of RNA velocity.

Sequence Assembler for short reads

VirSorter2: customizable pipeline to identify viral sequences from (meta)genomic data

a versatile open source tool for metagenomics (USEARCH alternative)

A tool set for short variant discovery in genetic sequence data