H

Read and write HDF5 files from Python

processing of EIGER HDF5 data

Tools for haplotype assembly from sequence data

A fast tool for hybrid genome assembly of long and short reads

HH-suite3 for fast remote homology detection and deep protein annotation

Set of programs to process, analyze and visualize Hi-C and capture Hi-C data

General purpose stuff to generate and handle Hi-C data in its simplest form.

A tool for mapping and performing quality control on Hi-C data

Haplotype-resolved assembler for accurate Hifi reads

Graph-based alignment of next generation sequencing reads to a population of genomes.

Biosequence analysis using profile hidden Markov models

Hidden Markov Models in Python with scikit-learn like API.

Software for motif discovery and next generation sequencing analysis

HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.

C library for high-throughput sequencing data formats.

HUMAnN: The HMP Unified Metabolic Analysis Network, version 3