Read and write HDF5 files from Python
processing of EIGER HDF5 data
Tools for haplotype assembly from sequence data
A fast tool for hybrid genome assembly of long and short reads
HH-suite3 for fast remote homology detection and deep protein annotation
Set of programs to process, analyze and visualize Hi-C and capture Hi-C data
General purpose stuff to generate and handle Hi-C data in its simplest form.
A tool for mapping and performing quality control on Hi-C data
Haplotype-resolved assembler for accurate Hifi reads
Graph-based alignment of next generation sequencing reads to a population of genomes.
Biosequence analysis using profile hidden Markov models
Hidden Markov Models in Python with scikit-learn like API.
Software for motif discovery and next generation sequencing analysis
HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
C library for high-throughput sequencing data formats.
HUMAnN: The HMP Unified Metabolic Analysis Network, version 3