| Software | Description | Available versions |
|---|---|---|
gappa | Genesis Applications for Phylogenetic Placement Analysis | 0.5.10.7.10.8.0 |
gargammel | Tool for simulating ancient DNA datasets | 1.1.2 |
gatk | The full Genome Analysis Toolkit (GATK) framework, license restricted. | 3.8 |
gatk4 | Genome Analysis Toolkit (GATK4) | 4.0.10.04.1.4.14.1.7.04.1.9.04.2.0.04.2.3.04.2.6.1 |
gautomatch | Fully automatic acccurate, convenient and extremely fast particle picking for EM | 0.56_sm62_cu8.0 |
gblocks | Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. | 0.91b |
gcc | GNU C C++ and Fortran Compiler | 7.3.07.5.08.4.09.3.011.2.0 |
gctf | real-time CTF determination and correction | 1.06 |
genometools-genometools | GenomeTools genome analysis system. | 1.6.2 |
getorganelle | Get organelle genomes from genome skimming data | 1.7.5.0 |
gffread | GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more. | 0.12.10.12.7 |
gffutils | Work with GFF and GTF files in a flexible database framework | 0.10.1 |
git | distributed version control system | 2.32.02.40.1 |
git-lfs | An open source Git extension for versioning large files | 2.13.1 |
glimpse | GLIMPSE is a phasing and imputation method for large-scale low-coverage sequencing studies. | 1.1.1 |
globus-cli | Globus CLI | 3.15.0 |
gmap | Genomic mapping and alignment program for mRNA and EST sequences. | 2016.09.232018.07.042020.06.01 |
gmap-fusion | GMAP-fusion is a utility for identifying candidate fusion transcripts based on transcript sequences reconstructed via RNA-Seq de novo transcriptome assembly. | 0.4.0 |
gmove | gmove - Gene modelling using various evidence. | 1.2 |
gmx_mmpbsa | gmx_MMPBSA is a tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files. | 1.5.1 |
gnuplot | Gnuplot, plotting from command line | 5.4.1 |
google-cloud-sdk | Google cloud sdk toolkit | 418.0.0 |
graphviz | Open Source graph visualization software. | 2.40.1 |
gridss | GRIDSS: a Genomic Rearrangement IDentification Software Suite | 1.9.0 |
gromacs | GROMACS is a versatile package to perform molecular dynamics. | 20182020.2 |
gsutil | A command line tool for interacting with cloud storage services. | 5.8 |
gtdbtk | A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. | 1.7.02.1.0 |
gubbins | Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins. | 3.2.0 |
gunc | Python package for detection of chimerism and contamination in prokaryotic genomes. | 1.0.5 |
guppy | Nanopore Guppy is a data processing toolkit that contains the Oxford Nanopore Technologies production basecalling algorithms and several bioinformatic post-processing features | 6.1.1-cpu6.1.1-gpu6.4.6-gpu6.5.7-gpu |
gvcfgenotyper | A utility for merging and genotyping strelka2 GVCFs. | 2019.02.26 |