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FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI).

A set of simply utilities for creating summaries from standard bioinformatics formats.

Fast GWAS

<Write a simple description of the tool>

A ultra-fast FASTQ preprocessor with full features (QC/adapters/trimming/filtering/splitting...)

fastq-pair: efficient synchronization of paired-end fastq files

FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect

A quality control tool for high throughput sequence data.

A variational framework for inferring population structure from SNP genotype data.

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences

The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.

Convert DNA from fasta to .2bit format

FlExible Extraction of LncRNA

HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes.

Filtlong is a tool for filtering long reads by quality

fineSTRUCTURE is a fast and powerful algorithm for identifying population structure using dense sequencing data.

Gene-flank analysis tool

Merge paired-end reads from fragments that are shorter than twice the read length

Fast and accurate de novo assembler for single molecule sequencing reads

FragGeneScan is an application for finding (fragmented) genes in short reads.

Bayesian haplotype-based polymorphism discovery and genotyping

FROGS is a workflow designed to metabarcoding sequence analysis

funannotate: eukaryotic genome annotation pipeline

FusionInspector is a component of the Trinity Cancer Transcriptome Analysis Toolkit (CTAT). FusionInspector assists in fusion transcript discovery by performing a supervised analysis of fusion predictions, attempting to recover and re-score evidence for such predictions. - https://github.com/FusionInspector/FusionInspector/wiki